Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs17095161 chr1:74806552 A/G 0 374 22.52 20.8 0.82 KM Plot
CRC rs17095246 chr1:74852971 A/C 0 369 22.32 23.83 0.82 KM Plot
CRC rs17136533 chr7:57836444 G/A 1.68E-5 368 23.37 20.3 11.92 KM Plot
CRC rs17202755 chr5:41264995 C/G 8.33E-6 369 22.67 20.92 10.65 KM Plot
CRC rs17216194 chr6:53528467 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs17216271 chr6:53529252 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs17216313 chr6:53530156 T/C 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs1813700 chr7:57729168 C/T 1.51E-5 373 12.6 20.27 23.83 KM Plot
CRC rs1814035 chr7:57726359 C/G 1.39E-5 373 12.6 20.05 24.47 KM Plot
CRC rs181638930 chr6:53530732 C/T 2.75E-5 372 22.3 24.77 7.13 KM Plot
CRC rs1818588 chr7:57724401 G/C 1.37E-6 371 11.92 20.58 23.37 KM Plot
CRC rs1818589 chr7:57724445 A/C 1.37E-6 371 11.92 20.58 23.37 KM Plot
CRC rs182154 chr12:59899708 C/G 3.38E-6 358 24.48 16.67 10.4 KM Plot
CRC rs183624073 chr5:54657439 C/A 2.52E-7 369 22.2 24.5 5.73 KM Plot
CRC rs1850174 chr7:57751998 T/G 3.64E-5 368 11.92 20.38 23.33 KM Plot